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    eReefs Data Access Notebooks

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    7. eReefs Data Access Notebooks

    eReefs Data Access Notebooks

    Jupyter Notebooks for Python + emsarray + eReefs data access

    Preview of eReefs Data Access Notebooks

    The CSIRO team behind the eReefs Data Explorer and emsarray have joined forces to create a suite of Jupyter notebooks with working examples of how to use emsarray to access, manipulate and visualise eReefs model results datasets in Python.

    Code Repository Location

    You can find the notebooks at https://github.com/eReefs/ereefs-data-access-notebooks

    Usage Instructions

    For instructions about how to launch and run these notebooks, please refer to the README.md file in the code repository

    Featured Examples

    • Discovering eReefs dataset dimensions in real-world coordinates (rather than grid-indices)
    • Extracting a timeseries at a point from eReefs model results
    • Plotting data variables from eReefs model results on a map with bokeh
    • Plotting data variables from eReefs model results on a map with matplotlib
    • Plotting vector field variables from eReefs model results on a map with matplotlib
    • Clipping (subsetting) eReefs data to a region of your choice
    • Extracting eReefs transect data, as either a line or as a vertical cross-section
    • Animating eReefs model results
    • Generating a simulated true colour plot from eReefs BGC reflectance variables

    Updated: March 20, 2026

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