eReefs Modelling System References

The publications listed on this page have inspired and informed the eReefs models and related research.

(For publications that have resulted from eReefs models and research, please see eReefs Research Outputs – Publications)

2014

Fabricius K., Logan M., Weeks S., Brodie J. 2014. The effects of river run-off on water clarity across the central Great Barrier Reef Marine Pollution Bulletin 84, 191–200. https://doi.org/10.1016/j.marpolbul.2014.05.012

Lewis S., Olley J., Furuichi T., Sharma A., Burton J. 2014. Complex sediment deposition history on a wide continental shelf: Implications for the calculation of accumulation rates on the Great Barrier Reef. Earth and Planetary Science Letters 393, 146–158. https://doi.org/10.1016/j.epsl.2014.02.038

Thompson A., Schroeder T., Brando V., Schaffelke B. 2014. Coral community responses to declining water quality: Whitsunday Islands, Great Barrier Reef, Australia. Coral Reefs https://doi.org/10.1007/s00338-014-1201-y

2013

Brodie J., Waterhouse J.,Schaffelke B., Kroon F., Thorburn P., Rolfe J., Johnson J., Fabricius K., Lewis S., Devlin M., Warne M., McKenzie L. 2013. Scientific Consensus Statement Land use impacts on Great Barrier Reef water quality and ecosystem condition. The State of Queensland 2013. Published by the Reef Water Quality Protection Plan Secretariat, July 2013. https://www.reefplan.qld.gov.au/__data/assets/pdf_file/0018/46170/scientific-consensus-statement-2013.pdf

Fabricius K., De’ath George, Humphrey C., Zagorskis I., Schaffelke B. 2013. Intra-annual variation in turbidity in response to terrestrial runoff on near-shore coral reefs of the Great Barrier Reef Estuarine, Coastal and Shelf Science 116, 57-65. https://doi.org/10.1016/j.ecss.2012.03.010

Olley J., Brooks A., Spencer J., Pietsch T., Borombovits D., Howley C., Curwen G. (2013) “Geochemistry and provenance of sediments from Princess Charlotte Bay, Northern Great Barrier Reef”, Appendix 12 of the Australian Rivers Institute and Griffith University report “An Empirically-based sediment budget for the Normanby Basin: Sediment Sources, Sinks & Drivers on the Cape York Savannah”, Australian Government Caring for our Country – Reef Rescue initiative. https://www.capeyorkwaterquality.info/reference/11

2012

Brodie J., Kroon F., Schaffelke B., Wolanski E., Lewis S., Devlin M., Bohnet I., Bainbridge Z., Waterhouse J., Davis A. 2012. Terrestrial pollutant runoff to the Great Barrier Reef: An update of issues, priorities and management responses. Marine Pollution Bulletin 65, 81–100. https://doi.org/10.1016/j.marpolbul.2011.12.012

Darnell R., Henderson B., Kroon F., Kuhnert P. 2012. Statistical power of detecting trends in total suspended sediment loads to the Great Barrier Reef Marine Pollution Bulletin 65, 203–209. https://doi.org/10.1016/j.marpolbul.2012.04.002

Kroon F., Kuhnert P., Henderson B., Wilkinson S., Kinsey-Henderson A., Abbott B., Brodie J., Turner R. 2012. River loads of suspended solids, nitrogen, phosphorus and herbicides delivered to the Great Barrier Reef lagoon Marine Pollution Bulletin 65, 167–181. https://doi.org/10.1016/j.marpolbul.2011.10.018

Kuhnert P., Henderson B., Lewis S., Bainbridge Z., Wilkinson S., Brodie J. 2012. Quantifying total suspended sediment export from the Burdekin River catchment using the loads regression estimator tool. Water Resour. Res., 48, W04533, https://doi.org/10.1029/2011WR011080

2010

Beaman, R. 2010. Project 3DGBR: a high-resolution depth model for the Great Barrier Reef and Coral Sea. Final Report to Marine and Tropical Sciences Research Facility Final Report, June 2010. https://www.researchgate.net/publication/312577170_Project_3DGBR_A_high-resolution_depth_model_for_the_Great_Barrier_Reef_and_Coral_Sea_Marine_and_Tropical_Sciences_Research_Facility_MTSRF_Project_25i1a_Final_Report_MTSRF_Cairns_Australia

2008

Debreu, L., Vouland, C., Blayo, E., 2008. AGRIF: adaptive grid refinement in Fortran. Comput. Geosci. 34 (1), 8–13. https://doi.org/10.1016/j.cageo.2007.01.009

Margvelashvili, N., Saint-Cast, F., Condie, S., 2008. Numerical modelling of the suspended sediment transport in Torres Strait. Continental Shelf Research 28, 2241-2256. https://doi.org/10.1016/j.csr.2008.03.037

Webster I., Brinkman R., Parslow J., Prange J., Steven A., Waterhouse J. 2008. Review and gap analysis of receiving-water water quality modelling in the Great Barrier Reef. CSIRO Report to Department of Environment, Water, Heritage and the Arts, 150 p. https://doi.org/10.4225/08/59aef5f842b25

Wolanski, E., Fabricius, K., Cooper, T., Humphrey, C. 2008 Wet season fine sediment dynamics on the inner shelf of the Great Barrier Reef. Estuarine, Coastal and Shelf Science. https://doi.org/10.1016/j.ecss.2007.10.014

2007

Steinberg, C., 2007. Impacts of climate change on the physical oceanography of the Great Barrier Reef. Chapter 3, Climate Change and the Great Barrier Reef, eds. Johnson J.E. and Marshall P.A. Great Barrier Reef Marine Park Authority & Australian Greenhouse Office, pp 51-74. https://hdl.handle.net/11017/536

2006

Herzfeld, M., 2006. An alternative coordinate system for solving finite difference ocean models. Ocean Modelling, 14, 174 – 196. https://doi.org/10.1016/j.ocemod.2006.04.002

2005

Furnas, M., Mitchell, A., Skuza, M. and Brodie, J., (2005). In the other 90%: phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef Lagoon. Mar. Poll. Bull., 51: 253-265. https://doi.org/10.1016/j.marpolbul.2004.11.010

2004

Harris, P.T., Hughes, M.G., Baker, E.K., Dalrymple, R.W., Keene, J.B., 2004. Sediment transport in distributary channels and its export to the pro-deltaic environment in a tidally-dominated delta: Fly River, Papua New Guinea. Continental Shelf Research, 24, 2431-2454. https://doi.org/10.1016/j.csr.2004.07.017

Larcombe, P., Carter, R. 2004. Cyclone pumping,sediment partitioning and the development of the Great Barrier Reef shelf system: a review. Quaternary Science Reviews 23, 107–135. https://doi.org/10.1016/j.quascirev.2003.10.003

2003

Furnas, M. 2003. Catchments and corals: terrestrial runoff to the Great Barrier Reef. Australian Institute of Marine Science, Queen land., 334 p. https://www.aims.gov.au/sites/default/files/catchments-and-corals.pdf

2002

Neil D., Orpin, A., Ridd, P., Yu, B. 2002. Sediment yield and impacts from river catchments to the Great Barrier Reef lagoon. Mar. Freshwater Res. 53, 733-752. https://dx.doi.org/10.1071/MF00151

2001

Brodie, J., Furnas, M., 2001. Status of nutrient and sediment inputs from Great Barrier Reef catchments and impacts on the Reef. Proceedings of the 2nd National Conference on Aquatic Environments: Sustaining Our Aquatic Environments – Implementing Solutions. 20-23 November, 2001, Townsville, 14 p. https://researchonline.jcu.edu.au/7817/

2000

Wolanski, E., Spagnol, S. (2000). Sticky waters in the Great Barrier Reef. Estuarine, Coastal and Shelf Science 50, 27-32. https://doi.org/10.1006/ecss.1999.0528

1999

Larcombe, P., Woolfe, K. 1999. Increased sediment supply to the Great Barrier Reef will not increase sediment accumulation at most coral reefs. Coral Reefs 18, 163-169. https://doi.org/10.1007/s003380050174

Orpin , A.R., Ridd, P.V. and Stewart, L.K. (1999) Assessment of the relative importance of major sediment-transport mechanisms in the central Great Barrier Reef lagoon. Australian Journal of Earth Science 46: 883 – 896. https://doi.org/10.1046/j.1440-0952.1999.00751.x

1996

Burrage, D.M., C. R. Steinberg, W. J. Skirving and J. A. Kleypas, 1996. Mesoscale circulation features of the Great Barrier Reef lagoon inferred from NOAA satellite imagery. Remote Sens. Environ., 56, 21 – 41. https://doi.org/10.1016/0034-4257(95)00226-X

1994

Madsen, O.S., 1994. Spectral wave-current bottom boundary layer flows, in Coastal Engineering 1994 Proceedings, 24th International Conference Coastal Engineering Research Council/ASCE, pp. 384-398. https://doi.org/10.1061/9780784400890.030

1991

Furnas, M.J., (1991). Net in situ growth rates of phytoplankton in an oligotrophic, tropical shelf ecosystem. Limnol. Oceanogr., 36(1): 13-29. https://doi.org/10.4319/lo.1991.36.1.0013

1987

Blumberg, A.F., Herring, J., 1987. Circulation modelling using orthogonal curvilinear coordinates, in Three-Dimensional Models of marine and Estuarine Dynamics, Ed. J.C.J. Nihoul and B.M. Jamart, Elsevier. https://doi.org/10.1016/S0422-9894(08)70442-2

Griffin, D. A., J. H. Middleton and L. Bode, 1987. The tidal and longer-period circulation of Capricornia, southern Great Barrier Reef. Aust. J. Mar. Freshw. Res., 38, 461 – 474. https://www.publish.csiro.au/MF/MF9870461

1986

Andrews, J.C. and Furnas, M.J., 1986. Subsurface intrusions of Coral Sea water into the central Great Barrier Reef – I. Structures and shelf-scale dynamics. Continental Shelf Res., 6(4):491-514. https://doi.org/10.1016/0278-4343(86)90020-8

Furnas, M and Mitchell, A.W., (1986). Phytoplankton dynamics in the central Great Barrier Reef – I. Seasonal changes in biomass and community structure and their relation to intrusive activity. Continental Shelf Res., 6(3): 363-384. https://doi.org/10.1016/0278-4343(86)90078-6

Griffin, D. A. and J. H. Middleton, 1986. Coastal trapped waves behind a large continental shelf island, southern Great Barrier Reef. J. Phys. Oceanogr., 16, 1651 – 1664. https://doi.org/10.1175/1520-0485(1986)016%3C1651:CTWBAL%3E2.0.CO;2

1982

Grant, D., Madsen, O., 1982. Movable bed roughness in unsteady oscillatory flow. J. of Geophysical Research, V. 87, N C1, pp. 469-481. https://doi.org/10.1029/JC087iC01p00469

1976

Ariathurai, R. & Krone, R. B. 1976. Finite element model for cohesive sediment transport. Journal of the Hydraulics Division, ASCE, 104, HY2, 323–328. https://doi.org/10.1061/JYCEAJ.0004489